New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM180355 = 99047050 (0.700)15 (0.210) 15/286 2.6 23.3% intergenic (+1/‑648) bglF1/tlpB1 PTS system, beta‑glucoside‑specific IIABC component, bglF1/Transposase‑like protein B
?AM180355 992355 = 49 (0.690)coding (2/81 nt) bglF1 PTS system, beta‑glucoside‑specific IIABC component, bglF1

GAGTTAAATGGTAAATACTTTACAAAACATGTTAATCAAGGAGATTTAGTGAAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM180355/990323‑990470
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTTAAAAGGAAATAAGTAAATCAACA  >  AM180355/992355‑992489
                                                                                                                                                                                                                                                                                           
GAGTTAAATGGTAAATACTTTACAAAACATGTTAATCAAGGAGATTTAGTGAAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTT                                                                                                                                       >  1:277927/1‑150
          GTAAATACTTTACAAAACATGTTAATCAAGGAGATTTAGTGAAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCA                                                                                                                                  >  1:100179/1‑145
                                    CAAGGAGATTTAGTGAAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGT                                                                                                            >  2:623614/1‑141
                                       GGAGATTTAGTGAAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACC                                                                                                <  2:869111/150‑1
                                                   AAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCT                                                                                                               >  1:1026606/1‑123
                                                   AAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCT                                                                                                               <  2:1028438/123‑1
                                                                     ATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTC                                                                               <  2:92809/137‑1
                                                                          GTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTA                                                              >  2:753363/1‑149
                                                                                   AGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTA                                                              >  2:511534/1‑140
                                                                                            AAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTA                                                     <  2:100359/140‑1
                                                                                                               GTAACTACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTT                         >  1:1001823/1‑149
                                                                                                                     ACGCCAGTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTTAAAAG                    <  1:751935/148‑1
                                                                                                                           GTTATAGTAAACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTTAAAAGGAA                 <  2:170613/145‑1
                                                                                                                                    AACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTTAAAAGGAAATAAGTAAATCAAC   <  1:705419/150‑1
                                                                                                                                    AACAATACATTTGATTTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTA‑TAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTTAAAAGGAAATAAGTAAATCAACA  <  2:35713/150‑1
                                                                                                                                                                                                                                                                                           
GAGTTAAATGGTAAATACTTTACAAAACATGTTAATCAAGGAGATTTAGTGAAAAAAGGTGATAAACTTATATCGTTTGATATAGATAAAATAAAAAAGGCTGGTTATGATGTAACTACGCCAGTTATAGTAAACAATACATTTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AM180355/990323‑990470
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTGGGCAAGTAGTTTCTTGTAAATCTAGTTATGTTTCAACCAATGATAATATAATTTCATTAGTATTAGCTGGTAATTAAGTTAATTTGACTAGAGATAAGTAAATTGATTTAAAAGGAAATAAGTAAATCAACA  >  AM180355/992355‑992489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.